Antimicrobial Activity and In-silico Molecular Docking Analysis of Azadirachta indica (Neem) Leaf Extracts against Multidrug-Resistant Clinical Isolates

Owolabi K.T *

Department of Science Laboratory Technology, Osun State Polytechnic, Iree, Osun State, Nigeria.

Kareem, S.O.

Department of Microbiology, Federal University of Agriculture, Ogun State, Nigeria.

Adeoye M.D.

Department of Chemical Science, Fountain University, Osogbo, Osun State, Nigeria.

Ogunbode S.M.

Department of Chemical Science, Fountain University, Osogbo, Osun State, Nigeria.

Ganiyu T.O.

Department of Biological Science, Fountain University, Osogbo, Osun State, Nigeria.

*Author to whom correspondence should be addressed.


Abstract

Azadirachta indica (neem) is widely recognised for its medicinal properties and extensive use in traditional medicine. The emergence of multidrug resistance and glucose 6 phosphate dehydrogenase deficiency resulting from infections and the use of synthetic pharmaceutical products for the treatment of infections has become a major public health threat. This study was designed to determine the antimicrobial effect of Azadirachta indica extracts in the context of G6PD deficiency and malaria co-infection on clinical isolates, comprising five (5) bacteria and four (4) fungi, using the agar well diffusion method. Minimum inhibitory and bactericidal concentrations, including kinetic growth of the isolates, were determined by macrodilution and spectrophotometry methods. The phytochemical and functional group profiling in the extracts was performed using GC–MS standard method and Fourier-Transform Infrared (FTIR) spectrophotometry. In-silico molecular docking analysis of the bioactive compounds in neem extract and oil was determined by computational modelling tools and the molecular Auto Dock software. Data were analysed using one-way ANOVA to compare the mean levels of significance of the parameters, where the level of significance was set as (P<0.05), and Duncan Multiple Range Test (DMRT) was used to compare the significance between the groups. The results revealed that aqueous neem extract exhibited limited antimicrobial activity, whereas methanolic and oil extracts demonstrated broad-spectrum antimicrobial potential. The aqueous extract produced the highest inhibition zone of 14 mm against Escherichia coli. Neem extracts demonstrate broad antifungal potential over amphotericin B, while methanolic neem has a 0.60 mm wide inhibitory zone against Saccharomyces cerevisiae. The minimum inhibitory concentration and minimum bactericidal concentration for neem oil were 2.00 mg/ml stronger. Growth kinetics indicated bacteriostatic effects of neem extracts on Staphylococcus aureus, Escherichia coli, Candida albicans, and Aspergillus niger. Neem oil and powder contain 14 and 18 phytochemical profiles, while α-D-Glucopyranose and n-Hexadecanoic acid were identified at the highest peak area of 21.98% and 12.31%, respectively. In-silico molecular docking identified diethylphthalate as a strong microbial protein inhibitor at -8.5 kcal, low binding energy with S aureus 1txt and E. coli 2ZIP proteins, while 9,17-octadecadienal (Z), methyl 10-methyl hexadecanoate, and oleic acid contributed to neem oil’s antibacterial activity with low binding energy of -8.00 kcal with S aureus 1txt and E. coli 2ZIP proteins. However, the therapeutic importance of neem in combating pathogenic microbes and its sustainability as an alternative medicine are significant. The findings of this research acknowledge and scientifically validate the use of plants against microbial pathogenic activities. The study recommends that plant extracts should be standardised by appropriate regulatory bodies to ensure their safe use, proper preservation, and sustainable utilisation, particularly in the context of the global prevalence of multidrug-resistant pathogens.

Keywords: Azadirachta indica, antimicrobial, extracts, fourier-transform infrared, multidrug resistance, medicinal plants


How to Cite

K.T, O., S.O., K., M.D., A., S.M., O., & T.O., G. (2026). Antimicrobial Activity and In-silico Molecular Docking Analysis of Azadirachta indica (Neem) Leaf Extracts against Multidrug-Resistant Clinical Isolates. Microbiology and Biotechnology Research: An Overview Vol. 7, 19–44. https://doi.org/10.9734/bpi/mbrao/v7/6881