Phytobiome-Mediated Plant Resilience to Climate-Induced Abiotic Stress: A Critical Review
Botuku Shravani *
Department of Agricultural Microbiology, UAS, GKVK, Bengaluru, India.
*Author to whom correspondence should be addressed.
Abstract
Rising temperatures, more erratic precipitation and increasing soil salinisation are converging to intensify drought, heat, salinity and waterlogging stress across global cropping systems, threatening yield stability at a time when agricultural production must expand to meet growing demand. Alongside genetic improvement and agronomic adaptation, the plant-associated microbial community, collectively described as the phytobiome, has attracted sustained scientific interest as a lever for climate resilience. This review critically synthesises evidence on how beneficial plant-microbe interactions, spanning rhizobacteria, arbuscular mycorrhizal fungi, bacterial and fungal endophytes, rhizobial symbionts and engineered synthetic communities, influence plant tolerance to climate-driven abiotic stress. Literature was drawn from PubMed, Europe PMC, OpenAlex, OpenAIRE, DOAJ, AGRIS, CORE and Google Scholar, supplemented by citation tracking, covering material from the conceptual establishment of the holobiont framework onward, with a search end date of 30 June 2026. The review moves beyond a catalogue of individual studies to examine the mechanistic convergence of ACC deaminase activity, osmotic adjustment, antioxidant modulation, induced systemic tolerance, nutrient acquisition and volatile signalling, and it critically appraises the evidence separately for drought, salinity, heat and flooding. A recurring finding is that mechanistic plausibility, established largely under controlled conditions, considerably outpaces consistent field-level demonstration; meta-analytic syntheses report positive but highly heterogeneous effect sizes strongly moderated by strain identity, formulation, soil type, host genotype and environmental context. Evidence is comparatively strong for single-stress, single-microbe systems in controlled environments and markedly weaker for combined stresses, long-term field performance, and engineered synthetic communities under real agroecological complexity. The review identifies host genotype-microbiome interaction, inoculant formulation and survival, and the transferability of laboratory mechanisms to open-field conditions as the principal unresolved constraints on translating phytobiome science into dependable climate adaptation practice. Priorities for future research include standardised, multi-site field trials with transparent reporting of environmental covariates, and integration of multi-omics approaches with host breeding programmes. The synthesis indicates that beneficial plant-microbe interactions constitute a mechanistically credible but not yet reliably deployable component of climate-adaptive agriculture, whose practical value will depend on resolving the substantial gap between controlled-condition efficacy and field-level reproducibility.
Keywords: Phytobiome, plant growth-promoting rhizobacteria, arbuscular mycorrhizal fungi, abiotic stress tolerance, climate change adaptation, microbiome engineering, drought and salinity stress, sustainable crop production